- What does と stand for?
Please refer to Use of とは when there doesn't seem to be comparison.
- 方式 (Does it mean "model"? It says system, form or formula.)
It's not a complicated word at all, but a bit roundabout if explained precisely using the English grammar. You can replace all ~方式の with "working by —", so that ボルトアクション方式の小銃 becomes "a rifle working by bolt action", but I guess you just say "a bolt action rifle" in natural English.
- 軍制式小銃の系列 (Does it mean military small rifle series?)
- 軍: army, here means the Imperial Army
- 制式: a term that means, dead literally, armament catalog designation; or used as an adjective to mean "officially adopted"
- 小銃: rifle
- 系列: series
- であり (Does it mean "have the quality of being" in this sentence?)
Please refer to Do I have a good grasp on the basics of what the continuative form is?
So,
大日本帝國のボルトアクション方式の軍制式小銃の系列であり
translates into
is a series of Imperial Japanese bolt action rifles adopted by the Army, and...