I heard it in a song called 「さよならはエモーション」 by サカナクション.
The last refrain in the lyrics starts like this:
As to the meaning of 乗りこなす:
（ 動サ五［四］ ） 思うままに操れる。巧みに乗る。 「駻馬（かんば）を－・す」
Now, I can't see the meaning behind 夜を乗りこなす even with looking up the meaning of 乗りこなす. Is it maybe just an artistic expression of the songwriter so the meaning has to be interpreted?
Also, the translation of 乗りこなす on jisho.org is:
to manage (a horse)
So the translation of the lyrics would be "I manage the night", but then it doesn't make sense in the whole context of the lyrics to me.